compile_c_files.m

functions\backwards2forwards.m

.........\backwards2forwards_2d_double.c

.........\backwards2forwards_2d_double.m

.........\backwards2forwards_3d_double.c

.........\backwards2forwards_3d_single.c

.........\fminlbfgs.m

.........\image_difference.m

.........\imgaussian.c

.........\imgaussian.m

.........\imresize3d.m

.........\inversegrid.m

.........\MakeDiffeomorphic.m

.........\make_grid_image.m

.........\make_init_grid.m

.........\maple_penalties_smoothing_2d.mw

.........\maple_penalties_smoothing_3d.mw

.........\maxNumCompThreads.c

.........\maxNumCompThreads.m

.........\mutual_histogram_double.c

.........\mutual_histogram_double.m

.........\mutual_histogram_single.c

.........\penalties_smoothness.m

.........\penalty_matrix.mat

.........\refine_grid.m

.........\showcs3.fig

.........\showcs3.m

.........\squared_difference_double.c

.........\squared_difference_double.m

.........\squared_difference_single.c

.........\strain.m

........._affine\affine_error_3d_double.c

................\affine_error_3d_single.c

................\affine_parameter_scaling.m

................\affine_registration_error.m

................\affine_registration_image.m

................\affine_transform.m

................\affine_transform_2d_double.c

................\affine_transform_2d_double.m

................\affine_transform_3d_double.c

................\affine_transform_3d_single.c

................\image_interpolation.c

................\image_interpolation.h

................\make_transformation_matrix.m

................\multiple_os_thread.h

..........nonrigid\bspline_coefficients.m

..................\bspline_error_2d_double.c

..................\bspline_error_3d_double.c

..................\bspline_error_3d_single.c

..................\bspline_grid_fitting.m

..................\bspline_registration_gradient.m

..................\bspline_registration_image.m

..................\bspline_transform.m

..................\bspline_transform_2d_double.c

..................\bspline_transform_2d_double.m

..................\bspline_transform_3d_double.c

..................\bspline_transform_3d_single.c

..................\bspline_trans_points_double.m

..................\image_interpolation.c

..................\image_interpolation.h

..................\image_interpolation.m

..................\jacobiandet_cost_gradient.m

..................\jacobiandet_error_2d_double.c

..................\jacobiandet_error_2d_double.m

..................\jacobiandet_error_3d_double.c

..................\jacobiandet_transform_2d_double.c

..................\jacobiandet_transform_2d_double.m

..................\jacobiandet_transform_3d_double.c

..................\movepixels.m

..................\movepixels_2d_double.c

..................\movepixels_2d_double.m

..................\movepixels_3d_double.c

..................\movepixels_3d_single.c

..................\multiple_os_thread.h

image_registration.m

.....s\brain1.png

......\brain2.png

......\brain3.png

......\landmarks.mat

......\landmarks1.png

......\landmarks2.png

......\lena.jpg

......\lenag1.png

......\lenag2.png

......\lenag3.png

......\lenag4.png

......\prostate1.png

......\prostate2.png

......\star1.png

......\star2.png

......\starpoints.mat

......\Thumbs.db

low_level_examples\addpaths.m

..................\example_2d_affine.m

..................\example_2d_nonrigid_1.m

..................\example_2d_nonrigid_2.m

..................\example_2d_nonrigid_3.m

..................\example_3d_affine.m

..................\example_3d_nonrigid.m

..................\get_example_data.m