angle\1.mat

.....\angle.asv

.....\angle.m

.....\angle1.m

.....\boneimg1.PNG

.....\boneimg2.PNG

.....\boneimg3.PNG

.....\example.m

.....\matlab.mat

.....\.edical\bone.jpg

.....\.......\bone1.jpg

.....\.......\bone2.jpg

.....\.......\boneimg1.png

.....\.......\boneimg2.png

.....\.......\boneimg3.png

.....\.......\deform.png

.....\.......\deform1.png

.....\.......\deform2.png

.....\.......\deform3.png

.....\.......\deformed.png

.....\.......\image.asv

.....\.......\image.m

.....\.......\nonrigid_version21b\boneimg1.png

.....\.......\...................\boneimg2.png

.....\.......\...................\boneimg3.png

.....\.......\...................\boneimg4.png

.....\.......\...................\boneimg5.png

.....\.......\...................\boneimg6.png

.....\.......\...................\boneimg7.png

.....\.......\...................\boneimg8.png

.....\.......\...................\boneimg9.png

.....\.......\...................\compile_c_files.m

.....\.......\...................\example.asv

.....\.......\...................\functions\backwards2forwards.m

.....\.......\...................\.........\backwards2forwards_2d_double.c

.....\.......\...................\.........\backwards2forwards_2d_double.m

.....\.......\...................\.........\backwards2forwards_3d_double.c

.....\.......\...................\.........\backwards2forwards_3d_single.c

.....\.......\...................\.........\fminlbfgs.m

.....\.......\...................\.........\image_difference.m

.....\.......\...................\.........\imgaussian.c

.....\.......\...................\.........\imgaussian.m

.....\.......\...................\.........\imresize3d.m

.....\.......\...................\.........\inversegrid.m

.....\.......\...................\.........\make_grid_image.m

.....\.......\...................\.........\make_init_grid.m

.....\.......\...................\.........\maple_penalties_smoothing_2d.mw

.....\.......\...................\.........\maple_penalties_smoothing_3d.mw

.....\.......\...................\.........\maxNumCompThreads.c

.....\.......\...................\.........\maxNumCompThreads.m

.....\.......\...................\.........\mutual_histogram_double.c

.....\.......\...................\.........\mutual_histogram_double.m

.....\.......\...................\.........\mutual_histogram_single.c

.....\.......\...................\.........\penalties_smoothness.m

.....\.......\...................\.........\penalty_matrix.mat

.....\.......\...................\.........\refine_grid.m

.....\.......\...................\.........\showcs3.fig

.....\.......\...................\.........\showcs3.m

.....\.......\...................\.........\squared_difference_double.c

.....\.......\...................\.........\squared_difference_double.m

.....\.......\...................\.........\squared_difference_single.c

.....\.......\...................\.........\strain.m

.....\.......\...................\functions

.....\.......\...................\........._affine\affine_error_3d_double.c

.....\.......\...................\................\affine_error_3d_single.c

.....\.......\...................\................\affine_parameter_scaling.m

.....\.......\...................\................\affine_registration_error.m

.....\.......\...................\................\affine_registration_image.m

.....\.......\...................\................\affine_transform.m

.....\.......\...................\................\affine_transform_2d_double.c

.....\.......\...................\................\affine_transform_2d_double.m

.....\.......\...................\................\affine_transform_3d_double.c

.....\.......\...................\................\affine_transform_3d_single.c

.....\.......\...................\................\image_interpolation.c

.....\.......\...................\................\image_interpolation.h

.....\.......\...................\................\make_transformation_matrix.m

.....\.......\...................\functions_affine

.....\.......\...................\..........nonrigid\bspline_coefficients.m

.....\.......\..................