JAGA

....\src

....\...\CVS

....\...\org

....\...\...\CVS

....\...\...\jaga

....\...\...\....\CVS

....\...\...\....\definitions

....\...\...\....\...........\CVS

....\...\...\....\...........\Fitness.java

....\...\...\....\...........\FitnessEvaluationAlgorithm.java

....\...\...\....\...........\GAParameterSet.java

....\...\...\....\...........\GAResult.java

....\...\...\....\...........\GeneticAlgorithm.java

....\...\...\....\...........\Individual.java

....\...\...\....\...........\IndividualsFactory.java

....\...\...\....\...........\Population.java

....\...\...\....\...........\RandomGenerator.java

....\...\...\....\...........\ReproductionAlgorithm.java

....\...\...\....\...........\SelectionAlgorithm.java

....\...\...\....\exampleApplications

....\...\...\....\...................\CVS

....\...\...\....\...................\Example1.java

....\...\...\....\...................\Example1Fitness.java

....\...\...\....\...................\Example2.java

....\...\...\....\...................\Example2Fitness.java

....\...\...\....\...................\MultiplexerEvolution.java

....\...\...\....\...................\proteinLocation

....\...\...\....\...................\...............\CVS

....\...\...\....\...................\...............\DataSplitter.java

....\...\...\....\...................\...............\Locator.java

....\...\...\....\...................\...............\ProgressiveTestGroupSizeHook.java

....\...\...\....\...................\...............\SubcellularProteinLocation.java

....\...\...\....\...................\...............\Validator.java

....\...\...\....\...................\SimpleImplementationDemo.java

....\...\...\....\fitnessEvaluation

....\...\...\....\.................\CVS

....\...\...\....\.................\largerNumbers

....\...\...\....\.................\.............\CVS

....\...\...\....\.................\.............\LargerDecimals.java

....\...\...\....\.................\multiplexer

....\...\...\....\.................\...........\CVS

....\...\...\....\.................\...........\Multiplexer.java

....\...\...\....\.................\...........\MultiplexerFitness.java

....\...\...\....\.................\proteinLocation

....\...\...\....\.................\...............\CVS

....\...\...\....\.................\...............\ProteinLocationTrainer.java

....\...\...\....\hooks

....\...\...\....\.....\AnalysisFrameUpdateThread.java

....\...\...\....\.....\AnalysisGraphPanel.java

....\...\...\....\.....\AnalysisHook.java

....\...\...\....\.....\BetterResultHook.java

....\...\...\....\.....\CVS

....\...\...\....\.....\DebugHook.java

....\...\...\....\.....\GAAnalysisFrame.java

....\...\...\....\.....\SimpleGAHook.java

....\...\...\....\individualRepresentation

....\...\...\....\........................\booleanFormulas

....\...\...\....\........................\...............\BooleanFormulaTree.java

....\...\...\....\........................\...............\BooleanFormulaTreeFactory.java

....\...\...\....\........................\...............\CVS

....\...\...\....\........................\CVS

....\...\...\....\........................\greycodedNumbers

....\...\...\....\........................\................\BinaryEncodedIndividual.java

....\...\...\....\........................\................\CVS

....\...\...\....\........................\................\NDecimalsIndividual.java

....\...\...\....\........................\................\NDecimalsIndividualSimpleFactory.java

....\...\...\....\........................\................\NNumbersGreycodedIndivudual.java

....\...\...\....\........................\................\RangeConstraint.java

....\...\...\....\........................\proteinLocation

....\...\...\....\........................\...............\AminoAcid.java

....\...\...\....\........................\...............\AminoAcidFactory.java

....\...\...\....\........................\...............\AminoAcidGroup.java

....\...\...\....\........................\...............\AminoAcidProperty.java

....\...\...\....\........................\...............\AminoAcidProper