文件名称:svm_alignment_0.7
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This the implementation of structural SVM for training complex alignment models for protein sequence alignment, especially for homology modeling. The structural SVM algorithm can incorporate many relevant features like secondary structure, relative exposed surface area, profiles and their various interaction into the alignment model. It was developed under Linux and compiles under gcc, built upon the svm^light software by Thorsten Joachims.
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下载文件列表
svm_alignment_0.7
.................\svm_alignment_0.7
.................\.................\ANOVA2.c
.................\.................\auxiliary.c
.................\.................\examples
.................\.................\........\alignments
.................\.................\........\..........\1B5T_A.1CNV.ali
.................\.................\........\..........\1B8G_A.2CAN_A.ali
.................\.................\........\..........\1B93_A.1C3P_A.ali
.................\.................\........\..........\1D9K_B.1CD8.ali
.................\.................\........\..........\1NAR.2ACQ.ali
.................\.................\........\..........\1NBB_A.256B_A.ali
.................\.................\........\..........\1PYT_D.1EXF_A.ali
.................\.................\........\..........\2FX2.3CHY.ali
.................\.................\........\..........\2MHR.1A7V_A.ali
.................\.................\........\..........\3SDH_A.1ITH_A.ali
.................\.................\........\target_annotations
.................\.................\........\..................\1B5T_A.sable
.................\.................\........\..................\1B8G_A.sable
.................\.................\........\..................\1B93_A.sable
.................\.................\........\..................\1D9K_B.sable
.................\.................\........\..................\1NAR.sable
.................\.................\........\..................\1NBB_A.sable
.................\.................\........\..................\1PYT_D.sable
.................\.................\........\..................\2FX2.sable
.................\.................\........\..................\2MHR.sable
.................\.................\........\..................\3SDH_A.sable
.................\.................\........\template_annotations
.................\.................\........\....................\1A7V_A.dssp
.................\.................\........\....................\1C3P_A.dssp
.................\.................\........\....................\1CD8.dssp
.................\.................\........\....................\1CNV.dssp
.................\.................\........\....................\1EXF_A.dssp
.................\.................\........\....................\1ITH_A.dssp
.................\.................\........\....................\256B_A.dssp
.................\.................\........\....................\2ACQ.dssp
.................\.................\........\....................\2CAN_A.dssp
.................\.................\........\....................\3CHY.dssp
.................\.................\hashtable
.................\.................\.........\hash.c
.................\.................\.........\hashtable.c
.................\.................\.........\hashtable.h
.................\.................\.........\hashtable_itr.c
.................\.................\.........\hashtable_itr.h
.................\.................\.........\hashtable_private.h
.................\.................\.........\hashtable_utility.c
.................\.................\.........\hashtable_utility.h
.................\.................\Makefile
.................\.................\README.TXT
.................\.................\SIMPLE.c
.................\.................\svm_light
.................\.................\.........\kernel.h
.................\.................\.........\LICENSE.txt
.................\.................\.........\Makefile
.................\.................\.........\svm_classify.c
.................\.................\.........\svm_common.c
.................\.................\.........\svm_common.h
.................\.................\.........\svm_hideo.c
.................\.................\.........\svm_learn.c
.................\.................\.........\svm_learn.h
.................\.................\.........\svm_learn_main.c
.................\.................\.........\svm_loqo.c
.................\.................\svm_struct
.................\.................\..........\M
.................\svm_alignment_0.7
.................\.................\ANOVA2.c
.................\.................\auxiliary.c
.................\.................\examples
.................\.................\........\alignments
.................\.................\........\..........\1B5T_A.1CNV.ali
.................\.................\........\..........\1B8G_A.2CAN_A.ali
.................\.................\........\..........\1B93_A.1C3P_A.ali
.................\.................\........\..........\1D9K_B.1CD8.ali
.................\.................\........\..........\1NAR.2ACQ.ali
.................\.................\........\..........\1NBB_A.256B_A.ali
.................\.................\........\..........\1PYT_D.1EXF_A.ali
.................\.................\........\..........\2FX2.3CHY.ali
.................\.................\........\..........\2MHR.1A7V_A.ali
.................\.................\........\..........\3SDH_A.1ITH_A.ali
.................\.................\........\target_annotations
.................\.................\........\..................\1B5T_A.sable
.................\.................\........\..................\1B8G_A.sable
.................\.................\........\..................\1B93_A.sable
.................\.................\........\..................\1D9K_B.sable
.................\.................\........\..................\1NAR.sable
.................\.................\........\..................\1NBB_A.sable
.................\.................\........\..................\1PYT_D.sable
.................\.................\........\..................\2FX2.sable
.................\.................\........\..................\2MHR.sable
.................\.................\........\..................\3SDH_A.sable
.................\.................\........\template_annotations
.................\.................\........\....................\1A7V_A.dssp
.................\.................\........\....................\1C3P_A.dssp
.................\.................\........\....................\1CD8.dssp
.................\.................\........\....................\1CNV.dssp
.................\.................\........\....................\1EXF_A.dssp
.................\.................\........\....................\1ITH_A.dssp
.................\.................\........\....................\256B_A.dssp
.................\.................\........\....................\2ACQ.dssp
.................\.................\........\....................\2CAN_A.dssp
.................\.................\........\....................\3CHY.dssp
.................\.................\hashtable
.................\.................\.........\hash.c
.................\.................\.........\hashtable.c
.................\.................\.........\hashtable.h
.................\.................\.........\hashtable_itr.c
.................\.................\.........\hashtable_itr.h
.................\.................\.........\hashtable_private.h
.................\.................\.........\hashtable_utility.c
.................\.................\.........\hashtable_utility.h
.................\.................\Makefile
.................\.................\README.TXT
.................\.................\SIMPLE.c
.................\.................\svm_light
.................\.................\.........\kernel.h
.................\.................\.........\LICENSE.txt
.................\.................\.........\Makefile
.................\.................\.........\svm_classify.c
.................\.................\.........\svm_common.c
.................\.................\.........\svm_common.h
.................\.................\.........\svm_hideo.c
.................\.................\.........\svm_learn.c
.................\.................\.........\svm_learn.h
.................\.................\.........\svm_learn_main.c
.................\.................\.........\svm_loqo.c
.................\.................\svm_struct
.................\.................\..........\M