modhmmc

.......\BasicMsaTMHMMCreator.java

.......\BetaGamma.java

.......\Cluster.java

.......\Constants.java

.......\DataReader.java

.......\DataReaderMultiAlpha.java

.......\Emission.java

.......\Forward_alt.java

.......\Forward_std.java

.......\HMM.java

.......\HMMConstruct.java

.......\hmmer2modhmm.java

.......\HMMSaver.java

.......\InternalInitDistrib.java

.......\MatchColumnIdentifyer.java

.......\ModelMaker.java

.......\Module.java

.......\MSA.java

.......\P.java

.......\Polynomial.java

.......\Profile7.java

.......\Profile9.java

.......\ProfileCreator.java

.......\ProfileHMMParameterEstimator.java

.......\ShadowMsaTMHMMCreator.java

.......\SingleLoop.java

.......\SingleNode.java

.......\StandardTMHMMCreator.java

.......\StandardTopologyModelerCreator.java

.......\Transition.java

.......\U_Turn.java

.......\Vertex.java