zipHMM-1.0.1\CMakeLists.txt

............\COPYING

............\example.hmm

............\........out\data_structure

............\...........\nStates2seq\2.seq

............\example.seq

............\README

............\test_data\data_structure_test\data_structure

............\.........\...................\nStates2seq\16.seq

............\.........\...................\...........\32.seq

............\.........\..................._post\data_structure

............\.........\........................\nStates2seq\16.seq

............\.........\........................\...........\32.seq

............\.........\postTest1.devices

............\.........\simpleGeneFinder.hmm

............\.........\simpleGeneFinder.seq

............\.........\test0.hmm

............\.........\test0.seq

............\.........\test1.devices

............\.........\test1.hmm

............\.........\test1.seq

............\.........\test2.hmm

............\.........\test2.seq

............\.........\test2_10000.seq

............\.........\test2_20.seq

............\.........\test3.hmm

............\.........\test3.seq

............\.........\test4.hmm

............\.........\test4.seq

............\.........\test4_10000.seq

............\.........\test5.hmm

............\.........\test5.seq

............\.........\test5_10000.seq

............\.........\test5_20.seq

............\.........\test6.hmm

............\.........\test6.seq

............\.........\test6_10000.seq

............\.........\test6_100000.seq

............\.........\test8States.hmm

............\.........\test8States.seq

............\.........\testNoSequence.hmm

............\.........\testNoSequence.seq

............\.........\testNoSolution.hmm

............\.........\testNoSolution.seq

............\.........\testNoStates.hmm

............\.........\testNoStates.seq

............\.........\testOffByOneEm.hmm

............\.........\testOffByOneEm.seq

............\.........\testOffByOneTrans.hmm

............\.........\testOffByOneTrans.seq

............\.........\testOneState.hmm

............\.........\testOneState.seq

............\.........\testVectorReserve.hmm

............\.........\testVectorReserve.seq

............\.........\testZeroAdd.hmm

............\.........\testZeroAdd.seq

............\zipHMM\build_forwarder.cpp

............\......\calibrate.cpp

............\......\calibrate.hpp

............\......\CMakeLists.txt

............\......\cpp_example.cpp

............\......\debug.cpp

............\......\debug.hpp

............\......\forward.cpp

............\......\forwarder.cpp

............\......\forwarder.hpp

............\......\generate_01_seq.cpp

............\......\generate_biased_hmm.cpp

............\......\generate_hmm.cpp

............\......\generate_seq.cpp

............\......\hmm_io.cpp

............\......\hmm_io.hpp

............\......\hmm_utils.cpp

............\......\hmm_utils.hpp

............\......\io_utils.cpp

............\......\io_utils.hpp

............\......\matrix.cpp

............\......\matrix.hpp

............\......\performance_description.cpp

............\......\performance_description.hpp

............\......\posterior_decoding.cpp

............\......\posterior_decoding.hpp

............\......\prob_spaces.cpp

............\......\prob_spaces.hpp

............\......\ProcessingDevice.hpp

............\......\PThreadProcessingDevice.cpp

............\......\PThreadProcessingDevice.hpp

............\......\py_forward.py

............\......\python_example.py

............\......\python_test.py

............\......\pyZipHMM.cpp

............\......\pyZipHMM.py

............\......\seq_io.cpp

............\......\seq_io.hpp

............\......\simple_forwarder.hpp

............\......\simple_stop_forwarder.cpp

............\......\simple_stop_forwarder.hpp

............\......\Stage1JobControl.cpp

............\......\Stage1JobControl.hpp

............\......\Stage2JobControl.hpp