cobra

.....\addLoopLawConstraints.m

.....\analyzeRxns.m

.....\changeGeneAssociation.m

.....\CHANGELOG

.....\changeObjective.m

.....\changeRxnBounds.m

.....\changeRxnMets.m

.....\checkCobraModelUnique.m

.....\checkDuplicateRxn.m

.....\checkObjective.m

.....\computeElementalMatrix.m

.....\computeMW.m

.....\convertIrrevFluxDistribution.m

.....\convertModelToEX.m

.....\convertToIrreversible.m

.....\convertToReversible.m

.....\deleteModelGenes.m

.....\design

.....\......\alphabetizeModel.m

.....\......\analyzeGCdesign.m

.....\......\analyzeOptKnock.m

.....\......\augmentBOF.m

.....\......\createBilevelMILPproblem.m

.....\......\doubleProductionEnvelope.m

.....\......\findCarbonRxns.m

.....\......\findHiCarbonRxns.m

.....\......\GDLS.m

.....\......\GetOptGeneSol.m

.....\......\multiProductionEnvelope.m

.....\......\multiProductionEnvelopeInorg.m

.....\......\optGene.m

.....\......\optGeneFitness.m

.....\......\optGeneFitnessTilt.m

.....\......\OptKnock.m

.....\......\randomKO.m

.....\......\setConstraintsIrrevModel.m

.....\......\simpleOptKnock.m

.....\......\testOptKnockSol.m

.....\......\theoretMaxProd.m

.....\detectDeadEnds.m

.....\docs

.....\....\alpha.png

.....\....\c++.png

.....\....\c.png

.....\....\cobra

.....\....\.....\addLoopLawConstraints.html

.....\....\.....\analyzeRxns.html

.....\....\.....\changeGeneAssociation.html

.....\....\.....\changeObjective.html

.....\....\.....\changeRxnBounds.html

.....\....\.....\changeRxnMets.html

.....\....\.....\checkCobraModelUnique.html

.....\....\.....\checkDuplicateRxn.html

.....\....\.....\checkMassChargeBalance.html

.....\....\.....\checkObjective.html

.....\....\.....\computeElementalMatrix.html

.....\....\.....\computeMW.html

.....\....\.....\convertIrrevFluxDistribution.html

.....\....\.....\convertModelToEX.html

.....\....\.....\convertToIrreversible.html

.....\....\.....\convertToReversible.html

.....\....\.....\deleteModelGenes.html

.....\....\.....\design

.....\....\.....\......\alphabetizeModel.html

.....\....\.....\......\analyzeGCdesign.html

.....\....\.....\......\analyzeOptKnock.html

.....\....\.....\......\augmentBOF.html

.....\....\.....\......\createBilevelMILPproblem.html

.....\....\.....\......\doubleProductionEnvelope.html

.....\....\.....\......\findCarbonRxns.html

.....\....\.....\......\findHiCarbonRxns.html

.....\....\.....\......\GDLS.html

.....\....\.....\......\GetOptGeneSol.html

.....\....\.....\......\menu.html

.....\....\.....\......\multiProductionEnvelope.html

.....\....\.....\......\multiProductionEnvelopeInorg.html

.....\....\.....\......\optGene.html

.....\....\.....\......\optGeneFitness.html

.....\....\.....\......\optGeneFitnessTilt.html

.....\....\.....\......\OptKnock.html

.....\....\.....\......\randomKO.html

.....\....\.....\......\setConstraintsIrrevModel.html

.....\....\.....\......\simpleOptKnock.html

.....\....\.....\......\testOptKnockSol.html

.....\....\.....\......\theoretMaxProd.html

.....\....\.....\detectDeadEnds.html

.....\....\.....\doubleGeneDeletion.html

.....\....\.....\doubleRobustnessAnalysis.html

.....\....\.....\dynamicFBA.html

.....\....\.....\enumerateOptimalSolutions.html

.....\....\.....\external

.....\....\.....\........\addpath_recurse.html

.....\....\.....\........\BuildMPS

.....\....\.....\........\........\BuildMPS.html

.....\....\.....\........\........\menu.html

.....\....\.....\........\........\SaveMPS.html

.....\....\.....\........\errobar_plus.html

.....\....\.....\........\ezimplot3.html

.....\....\.....\........\m2html