ged-master

ged-master\.gitignore

ged-master\README.txt

ged-master\alignImages.m

ged-master\analyse3d.m

ged-master\annotate3d.m

ged-master\annotations.mat

ged-master\atomicLogUpdate.m

ged-master\biasCorrect.m

ged-master\biasCorrect3d.m

ged-master\biasCorrectNSegment3d.m

ged-master\boneAnalysis.m

ged-master\boneFraction.m

ged-master\boneFraction2.m

ged-master\boneFraction3.m

ged-master\boneFraction3_halfsize.m

ged-master\boneFraction3d.m

ged-master\boneFractionFunction.m

ged-master\boneFractionInnerFunction.m

ged-master\cdf2pdf.m

ged-master\circ.mat

ged-master\circularRegionOfInterst3d.m

ged-master\convertUnit.m

ged-master\darkMask.tiff

ged-master\desiredHistogram.mat

ged-master\edgeEffect3d.m

ged-master\energyImage.m

ged-master\entropyCost.m

ged-master\equalizeImage.m

ged-master\experimentationScripts

ged-master\experimentationScripts\analyzeSmallDataTryout.m

ged-master\experimentationScripts\annotationCell2Struct.m

ged-master\experimentationScripts\biasCorrect.m

ged-master\experimentationScripts\biasCorrectPlay.m

ged-master\experimentationScripts\createOverlayImages.m

ged-master\experimentationScripts\darkMask.tiff

ged-master\experimentationScripts\dist_hist2_pag_runner.m

ged-master\experimentationScripts\edgeDetection.m

ged-master\experimentationScripts\extractSlice.m

ged-master\experimentationScripts\extractSlicePlay.m

ged-master\experimentationScripts\firstImageInStack.m

ged-master\experimentationScripts\fminsearchPlay.m

ged-master\experimentationScripts\getMajorAxis.m

ged-master\experimentationScripts\getRotMat.m

ged-master\experimentationScripts\getSliceScript.m

ged-master\experimentationScripts\getSliceScript2.m

ged-master\experimentationScripts\getSliceTest.m

ged-master\experimentationScripts\imsc.m

ged-master\experimentationScripts\intensityProblem.m

ged-master\experimentationScripts\interpn4DExample.m

ged-master\experimentationScripts\interpnPlay.m

ged-master\experimentationScripts\jonMoede.m

ged-master\experimentationScripts\lightMask.tiff

ged-master\experimentationScripts\loadGed.m

ged-master\experimentationScripts\makeBiasImage.m

ged-master\experimentationScripts\makeCircle.m

ged-master\experimentationScripts\makeSmallDatasets.m

ged-master\experimentationScripts\normalizedConvExampleScript.m

ged-master\experimentationScripts\parsave.m

ged-master\experimentationScripts\plotShadingPlay.m

ged-master\experimentationScripts\resampleSegmentations.m

ged-master\experimentationScripts\resampleSmallData.m

ged-master\experimentationScripts\rotPlanePlay.m

ged-master\experimentationScripts\runMakeSmallDatasets.sh

ged-master\experimentationScripts\sample3d.m

ged-master\experimentationScripts\sample3dTest.m

ged-master\experimentationScripts\sampleGed.m

ged-master\experimentationScripts\saveBone.m

ged-master\experimentationScripts\saveBoneImplant.m

ged-master\experimentationScripts\saveDstMap.m

ged-master\experimentationScripts\saveImp.m

ged-master\experimentationScripts\segmentHistologyX10.m

ged-master\experimentationScripts\segmentImplantPlay.m

ged-master\experimentationScripts\segmentImplantPlay2.m

ged-master\experimentationScripts\sgnDstFromImg.m

ged-master\experimentationScripts\sgnDstMapFromSegmentations.m

ged-master\experimentationScripts\shadeArea.m

ged-master\experimentationScripts\slicePlay.m

ged-master\experimentationScripts\testEnergyImage.m

ged-master\experimentationScripts\testNormConv.m

ged-master\experimentationScripts\textureStats.m

ged-master\experimentationScripts\threadSideImage.m

ged-master\experimentationScripts\thresholdSegment.m

ged-master\experimentationScripts\thresholdSegmentCaller.m

ged-master\experimentationScripts\torstenKode.m

ged-master\experimentationScripts\visualizeSliceScript.m

ged-master\experimentationScripts\volDownsamplePlay.m

ged-master\extractSlice.m

ged-master\firstImageInStack

ged-master\firstImageInStack\5.05_ID1662_770_0001_mask.vol.png

ged-master\firstImageInStack\5.05_ID1662_771_0001_mask.vol.png

ged-master\firstImageInStack\5.05_ID1662_772_0001_mask.vol.png

ged-master\firstImageInStack\5.05_ID1662_773_0001_mask.vol.png

ged-master\firstImageInStack\5.05_ID1684_806_0001_mask.vol.png

ged-master\firstImageInStack\5.05_ID1684_809_0001_mask.vol.png

ged-master\firstImageInStack\5.05_ID1689_805_0001_mask.vol.png

ged-master\firstImageInStack\5.05_ID1689_808_0001_mask.vol.png

ged-master\forhold.txt

ged-master\fraction3d.m

ged-master\fractionPart.m