compile_c_files.m

functions\backwards2forwards.m

functions\backwards2forwards_2d_double.c

functions\backwards2forwards_2d_double.m

functions\backwards2forwards_3d_double.c

functions\backwards2forwards_3d_single.c

functions\fminlbfgs.m

functions\image_difference.m

functions\imgaussian.c

functions\imgaussian.m

functions\imresize3d.m

functions\inversegrid.m

functions\MakeDiffeomorphic.m

functions\make_grid_image.m

functions\make_init_grid.m

functions\maple_penalties_smoothing_2d.mw

functions\maple_penalties_smoothing_3d.mw

functions\maxNumCompThreads.c

functions\maxNumCompThreads.m

functions\mutual_histogram_double.c

functions\mutual_histogram_double.m

functions\mutual_histogram_single.c

functions\penalties_smoothness.m

functions\penalty_matrix.mat

functions\refine_grid.m

functions\showcs3.fig

functions\showcs3.m

functions\squared_difference_double.c

functions\squared_difference_double.m

functions\squared_difference_single.c

functions\strain.m

functions_affine\affine_error_3d_double.c

functions_affine\affine_error_3d_single.c

functions_affine\affine_parameter_scaling.m

functions_affine\affine_registration_error.m

functions_affine\affine_registration_image.m

functions_affine\affine_transform.m

functions_affine\affine_transform_2d_double.c

functions_affine\affine_transform_2d_double.m

functions_affine\affine_transform_3d_double.c

functions_affine\affine_transform_3d_single.c

functions_affine\image_interpolation.c

functions_affine\image_interpolation.h

functions_affine\make_transformation_matrix.m

functions_affine\multiple_os_thread.h

functions_nonrigid\bspline_coefficients.m

functions_nonrigid\bspline_error_2d_double.c

functions_nonrigid\bspline_error_3d_double.c

functions_nonrigid\bspline_error_3d_single.c

functions_nonrigid\bspline_grid_fitting.m

functions_nonrigid\bspline_registration_gradient.m

functions_nonrigid\bspline_registration_image.m

functions_nonrigid\bspline_transform.m

functions_nonrigid\bspline_transform_2d_double.c

functions_nonrigid\bspline_transform_2d_double.m

functions_nonrigid\bspline_transform_3d_double.c

functions_nonrigid\bspline_transform_3d_single.c

functions_nonrigid\bspline_trans_points_double.m

functions_nonrigid\image_interpolation.c

functions_nonrigid\image_interpolation.h

functions_nonrigid\image_interpolation.m

functions_nonrigid\jacobiandet_cost_gradient.m

functions_nonrigid\jacobiandet_error_2d_double.c

functions_nonrigid\jacobiandet_error_2d_double.m

functions_nonrigid\jacobiandet_error_3d_double.c

functions_nonrigid\jacobiandet_transform_2d_double.c

functions_nonrigid\jacobiandet_transform_2d_double.m

functions_nonrigid\jacobiandet_transform_3d_double.c

functions_nonrigid\movepixels.m

functions_nonrigid\movepixels_2d_double.c

functions_nonrigid\movepixels_2d_double.m

functions_nonrigid\movepixels_3d_double.c

functions_nonrigid\movepixels_3d_single.c

functions_nonrigid\multiple_os_thread.h

image_registration.m

images\brain1.png

images\brain2.png

images\brain3.png

images\landmarks.mat

images\landmarks1.png

images\landmarks2.png

images\lena.jpg

images\lenag1.png

images\lenag2.png

images\lenag3.png

images\lenag4.png

images\prostate1.png

images\prostate2.png

images\star1.png

images\star2.png

images\starpoints.mat

images\Thumbs.db

low_level_examples\addpaths.m

low_level_examples\example_2d_affine.m

low_level_examples\example_2d_nonrigid_1.m

low_level_examples\example_2d_nonrigid_2.m

low_level_examples\example_2d_nonrigid_3.m

low_level_examples\example_3d_affine.m

low_level_examples\example_3d_nonrigid.m

low_level_examples\get_example_data.m