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文件名称:cobra

  • 所属分类：
  • matlab例程
  • 资源属性：
  • [Matlab] [源码]
  • 上传时间：
  • 2014-02-11
  • 文件大小：
  • 9.35mb
  • 下载次数：
  • 0次
  • 提 供 者：
  • Meng ******
  • 相关连接：
  • 无
  • 下载说明：
  • 别用迅雷下载，失败请重下，重下不扣分！
修正介绍说明

介绍说明－－下载内容均来自于网络，请自行研究使用

Over the past decade, a growing community of researchers has emerged around the use of constraint-based reconstruction and analysis (COBRA) methods to simulate, analyze and predict a variety of metabolic phenotypes using genome-scale models. The COBRA Toolbox, a MATLAB package for implementing COBRA methods, was presented earlier. Here we present a substantial update of this in silico toolbox. Version 2.0 of the COBRA Toolbox expands the scope of computations by including in silico analysis methods developed since its original release.
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下载文件列表





cobra\addLoopLawConstraints.m

.....\analyzeRxns.m

.....\changeGeneAssociation.m

.....\CHANGELOG

.....\changeObjective.m

.....\changeRxnBounds.m

.....\changeRxnMets.m

.....\checkCobraModelUnique.m

.....\checkDuplicateRxn.m

.....\checkObjective.m

.....\computeElementalMatrix.m

.....\computeMW.m

.....\convertIrrevFluxDistribution.m

.....\convertModelToEX.m

.....\convertToIrreversible.m

.....\convertToReversible.m

.....\deleteModelGenes.m

.....\..sign\alphabetizeModel.m

.....\......\analyzeGCdesign.m

.....\......\analyzeOptKnock.m

.....\......\augmentBOF.m

.....\......\createBilevelMILPproblem.m

.....\......\doubleProductionEnvelope.m

.....\......\findCarbonRxns.m

.....\......\findHiCarbonRxns.m

.....\......\GDLS.m

.....\......\GetOptGeneSol.m

.....\......\multiProductionEnvelope.m

.....\......\multiProductionEnvelopeInorg.m

.....\......\optGene.m

.....\......\optGeneFitness.m

.....\......\optGeneFitnessTilt.m

.....\......\OptKnock.m

.....\......\randomKO.m

.....\......\setConstraintsIrrevModel.m

.....\......\simpleOptKnock.m

.....\......\testOptKnockSol.m

.....\......\theoretMaxProd.m

.....\detectDeadEnds.m

.....\.ocs\alpha.png

.....\....\c++.png

.....\....\c.png

.....\....\.obra\addLoopLawConstraints.html

.....\....\.....\analyzeRxns.html

.....\....\.....\changeGeneAssociation.html

.....\....\.....\changeObjective.html

.....\....\.....\changeRxnBounds.html

.....\....\.....\changeRxnMets.html

.....\....\.....\checkCobraModelUnique.html

.....\....\.....\checkDuplicateRxn.html

.....\....\.....\checkMassChargeBalance.html

.....\....\.....\checkObjective.html

.....\....\.....\computeElementalMatrix.html

.....\....\.....\computeMW.html

.....\....\.....\convertIrrevFluxDistribution.html

.....\....\.....\convertModelToEX.html

.....\....\.....\convertToIrreversible.html

.....\....\.....\convertToReversible.html

.....\....\.....\deleteModelGenes.html

.....\....\.....\..sign\alphabetizeModel.html

.....\....\.....\......\analyzeGCdesign.html

.....\....\.....\......\analyzeOptKnock.html

.....\....\.....\......\augmentBOF.html

.....\....\.....\......\createBilevelMILPproblem.html

.....\....\.....\......\doubleProductionEnvelope.html

.....\....\.....\......\findCarbonRxns.html

.....\....\.....\......\findHiCarbonRxns.html

.....\....\.....\......\GDLS.html

.....\....\.....\......\GetOptGeneSol.html

.....\....\.....\......\menu.html

.....\....\.....\......\multiProductionEnvelope.html

.....\....\.....\......\multiProductionEnvelopeInorg.html

.....\....\.....\......\optGene.html

.....\....\.....\......\optGeneFitness.html

.....\....\.....\......\optGeneFitnessTilt.html

.....\....\.....\......\OptKnock.html

.....\....\.....\......\randomKO.html

.....\....\.....\......\setConstraintsIrrevModel.html

.....\....\.....\......\simpleOptKnock.html

.....\....\.....\......\testOptKnockSol.html

.....\....\.....\......\theoretMaxProd.html

.....\....\.....\detectDeadEnds.html

.....\....\.....\doubleGeneDeletion.html

.....\....\.....\doubleRobustnessAnalysis.html

.....\....\.....\dynamicFBA.html

.....\....\.....\enumerateOptimalSolutions.html

.....\....\.....\.xternal\addpath_recurse.html

.....\....\.....\........\BuildMPS\BuildMPS.html

.....\....\.....\........\........\menu.html

.....\....\.....\........\........\SaveMPS.html

.....\....\.....\........\errobar_plus.html

.....\....\.....\........\ezimplot3.html

.....\....\.....\........\m2html\m2html.html

.....\....\.....\........\......\mdot.html

.....\....\.....\........\......\menu.html

.....\....\.....\........\menu.html

.....\....\.....\........\sparseNull.html

.....\....\.....\extractCompModel.html

.....\....\.....\extractMetModel.html

.....\....\.....\extractSubNetwork.html

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