文件名称:libsequence-1.7.4
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一个用来计算进化遗传分析的库.重点在于对snp数据的分析和序列驱异的计算-libsequence is a C++ library designed to aid writing applications for genomics and evolutionary genetics. The library is intended to be viewed as a "BioC++" akin to the bioperl project, although the scope of libsequence is limited in comparison. the focus is on biological computation, such as the analysis of SNP data and sequence divergence, and the analysis of data generated from coalescent simulation.
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libsequence-1.7.4
.................\acinclude.m4
.................\aclocal.m4
.................\AUTHORS
.................\ChangeLog
.................\config.guess
.................\config.h.in
.................\config.sub
.................\configure
.................\configure.in
.................\COPYING
.................\debian
.................\......\changelog
.................\......\changelog~
.................\......\control
.................\......\copyright
.................\......\crontab.ex
.................\......\dirs
.................\......\diversions.ex
.................\......\inetd.conf.ex
.................\......\info.ex
.................\......\init.d.ex
.................\......\libsequence1.files
.................\......\manpage.1.ex
.................\......\menu.ex
.................\......\README.debian
.................\......\rules
.................\......\watch.ex
.................\depcomp
.................\doc
.................\...\images
.................\...\......\2subs
.................\...\......\2subs.jpg
.................\...\......\2subs.pdf
.................\...\......\3subs
.................\...\......\3subs.jpg
.................\...\......\3subs.pdf
.................\...\......\temp
.................\...\libsequence.doxygen
.................\...\Makefile
.................\examples
.................\........\baseComp.cc
.................\........\bottleneck.cc
.................\........\codons.cc
.................\........\correlations.cc
.................\........\critical_values.cc
.................\........\FastaExplicit.cc
.................\........\fragments.cc
.................\........\freerec.cc
.................\........\gestimator.cc
.................\........\getopt.c
.................\........\getopt.h
.................\........\getopt1.c
.................\........\int_handler.cc
.................\........\int_handler.hpp
.................\........\Makefile
.................\........\ms--.cc
.................\........\msbeta.cc
.................\........\msstats.cc
.................\........\PolyTableIterators.cc
.................\........\slidingWindow.cc
.................\........\slidingWindow2.cc
.................\........\translateTest.cc
.................\........\ufs.cc
.................\........\valid_dna.cc
.................\INSTALL
.................\install-sh
.................\libsequence2.lsm.in
.................\libsequence2.spec.in
.................\ltmain.sh
.................\m4
.................\..\libtool.m4
.................\..\ltoptions.m4
.................\..\ltsugar.m4
.................\..\ltversion.m4
.................\..\lt~obsolete.m4
.................\Makefile.am
.................\Makefile.in
.................\missing
.................\mkinstalldirs
.................\NEWS
.................\README
.................\Sequence
.................\........\Alignment.hpp
.................\........\AlignStream.hpp
.................\........\bits
.................\........\....\Alignment.tcc
.................\........\....\AlignStream.tcc
.................\........\....\Clustalw.tcc
.................\........\....\Correlations.tcc
.................\........\....\CountingOperators.tcc
.................\........\....\descriptiveStats.tcc
.................\........\....\Makefile.am
.................\........\....\Makefile.in
.................\........\....\phylipData.tcc
.................\........\....\PolySites.tcc
.................\........\....\PolyTable.tcc
.................\........\....\PolyTableSlice.tcc
.................\........\....\Snn.tcc
.................\........\Clustalw.hpp