文件名称:svm_alignment_0.7
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This the implementation of structural SVM for training complex alignment models for protein sequence alignment, especially for homology modeling. The structural SVM algorithm can incorporate many relevant features like secondary structure, relative exposed surface area, profiles and their various interaction into the alignment model. It was developed under Linux and compiles under gcc, built upon the svm^light software by Thorsten Joachims.
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下载文件列表
压缩包 : 85375554svm_alignment_0.7.rar 列表 svm_alignment_0.7\svm_alignment_0.7\ANOVA2.c svm_alignment_0.7\svm_alignment_0.7\auxiliary.c svm_alignment_0.7\svm_alignment_0.7\examples\alignments\1B5T_A.1CNV.ali svm_alignment_0.7\svm_alignment_0.7\examples\alignments\1B8G_A.2CAN_A.ali svm_alignment_0.7\svm_alignment_0.7\examples\alignments\1B93_A.1C3P_A.ali svm_alignment_0.7\svm_alignment_0.7\examples\alignments\1D9K_B.1CD8.ali svm_alignment_0.7\svm_alignment_0.7\examples\alignments\1NAR.2ACQ.ali svm_alignment_0.7\svm_alignment_0.7\examples\alignments\1NBB_A.256B_A.ali svm_alignment_0.7\svm_alignment_0.7\examples\alignments\1PYT_D.1EXF_A.ali svm_alignment_0.7\svm_alignment_0.7\examples\alignments\2FX2.3CHY.ali svm_alignment_0.7\svm_alignment_0.7\examples\alignments\2MHR.1A7V_A.ali svm_alignment_0.7\svm_alignment_0.7\examples\alignments\3SDH_A.1ITH_A.ali svm_alignment_0.7\svm_alignment_0.7\examples\alignments svm_alignment_0.7\svm_alignment_0.7\examples\target_annotations\1B5T_A.sable svm_alignment_0.7\svm_alignment_0.7\examples\target_annotations\1B8G_A.sable svm_alignment_0.7\svm_alignment_0.7\examples\target_annotations\1B93_A.sable svm_alignment_0.7\svm_alignment_0.7\examples\target_annotations\1D9K_B.sable svm_alignment_0.7\svm_alignment_0.7\examples\target_annotations\1NAR.sable svm_alignment_0.7\svm_alignment_0.7\examples\target_annotations\1NBB_A.sable svm_alignment_0.7\svm_alignment_0.7\examples\target_annotations\1PYT_D.sable svm_alignment_0.7\svm_alignment_0.7\examples\target_annotations\2FX2.sable svm_alignment_0.7\svm_alignment_0.7\examples\target_annotations\2MHR.sable svm_alignment_0.7\svm_alignment_0.7\examples\target_annotations\3SDH_A.sable svm_alignment_0.7\svm_alignment_0.7\examples\target_annotations svm_alignment_0.7\svm_alignment_0.7\examples\template_annotations\1A7V_A.dssp svm_alignment_0.7\svm_alignment_0.7\examples\template_annotations\1C3P_A.dssp svm_alignment_0.7\svm_alignment_0.7\examples\template_annotations\1CD8.dssp svm_alignment_0.7\svm_alignment_0.7\examples\template_annotations\1CNV.dssp svm_alignment_0.7\svm_alignment_0.7\examples\template_annotations\1EXF_A.dssp svm_alignment_0.7\svm_alignment_0.7\examples\template_annotations\1ITH_A.dssp svm_alignment_0.7\svm_alignment_0.7\examples\template_annotations\256B_A.dssp svm_alignment_0.7\svm_alignment_0.7\examples\template_annotations\2ACQ.dssp svm_alignment_0.7\svm_alignment_0.7\examples\template_annotations\2CAN_A.dssp svm_alignment_0.7\svm_alignment_0.7\examples\template_annotations\3CHY.dssp svm_alignment_0.7\svm_alignment_0.7\examples\template_annotations svm_alignment_0.7\svm_alignment_0.7\examples svm_alignment_0.7\svm_alignment_0.7\hashtable\hash.c svm_alignment_0.7\svm_alignment_0.7\hashtable\hashtable.c svm_alignment_0.7\svm_alignment_0.7\hashtable\hashtable.h svm_alignment_0.7\svm_alignment_0.7\hashtable\hashtable_itr.c svm_alignment_0.7\svm_alignment_0.7\hashtable\hashtable_itr.h svm_alignment_0.7\svm_alignment_0.7\hashtable\hashtable_private.h svm_alignment_0.7\svm_alignment_0.7\hashtable\hashtable_utility.c svm_alignment_0.7\svm_alignment_0.7\hashtable\hashtable_utility.h svm_alignment_0.7\svm_alignment_0.7\hashtable svm_alignment_0.7\svm_alignment_0.7\Makefile svm_alignment_0.7\svm_alignment_0.7\README.TXT svm_alignment_0.7\svm_alignment_0.7\SIMPLE.c svm_alignment_0.7\svm_alignment_0.7\svm_light\kernel.h svm_alignment_0.7\svm_alignment_0.7\svm_light\LICENSE.txt svm_alignment_0.7\svm_alignment_0.7\svm_light\Makefile svm_alignment_0.7\svm_alignment_0.7\svm_light\svm_classify.c svm_alignment_0.7\svm_alignment_0.7\svm_light\svm_common.c svm_alignment_0.7\svm_alignment_0.7\svm_light\svm_common.h svm_alignment_0.7\svm_alignment_0.7\svm_light\svm_hideo.c svm_alignment_0.7\svm_alignment_0.7\svm_light\svm_learn.c svm_alignment_0.7\svm_alignment_0.7\svm_light\svm_learn.h svm_alignment_0.7\svm_alignment_0.7\svm_light\svm_learn_main.c svm_alignment_0.7\svm_alignment_0.7\svm_light\svm_loqo.c svm_alignment_0.7\svm_alignment_0.7\svm_light svm_alignment_0.7\svm_alignment_0.7\svm_struct\Makefile svm_alignment_0.7\svm_alignment_0.7\svm_struct\svm_struct_classify.c svm_alignment_0.7\svm_alignment_0.7\svm_struct\svm_struct_common.c svm_alignment_0.7\svm_alignment_0.7\svm_struct\svm_struct_common.h svm_alignment_0.7\svm_alignment_0.7\svm_struct\svm_struct_learn.c svm_alignment_0.7\svm_alignment_0.7\svm_struct\svm_struct_learn.h svm_alignment_0.7\svm_alignment_0.7\svm_struct\svm_struct_main.c svm_alignment_0.7\svm_alignment_0.7\svm_struct svm_alignment_0.7\svm_alignment_0.7\svm_struct_api.c svm_alignment_0.7\svm_alignment_0.7\svm_struct_api.h svm_alignment_0.7\svm_alignment_0.7\svm_struct_api_types.h svm_alignment_0.7\svm_alignment_0.7\TENSOR.c svm_alignment_0.7\svm_alignment_0.7\test.classification_examples svm_alignment_0.7\svm_alignment_0.7\test.examples svm_alignment_0.7\svm_alignment_0.7\test.target_annotations svm_alignment_0.7\svm_alignment_0.7\test.template_annotations svm_alignment_0.7\svm_alignment_0.7\WINDOW.c svm_alignment_0.7\svm_alignment_0.7 svm_alignment_0.7