compile_c_files.m

functions

.........\backwards2forwards.m

.........\backwards2forwards_2d_double.c

.........\backwards2forwards_2d_double.m

.........\backwards2forwards_3d_double.c

.........\backwards2forwards_3d_single.c

.........\fminlbfgs.m

.........\image_difference.m

.........\imgaussian.c

.........\imgaussian.m

.........\imresize3d.m

.........\make_grid_image.m

.........\make_init_grid.m

.........\maple_penalties_smoothing_2d.mw

.........\maple_penalties_smoothing_3d.mw

.........\mutual_histogram_double.c

.........\mutual_histogram_double.m

.........\mutual_histogram_single.c

.........\penalties_smoothness.m

.........\penalty_matrix.mat

.........\refine_grid.m

.........\showcs3.fig

.........\showcs3.m

.........\squared_difference_double.c

.........\squared_difference_double.m

.........\squared_difference_single.c

.........\strain.m

functions_affine

................\affine_error_3d_double.c

................\affine_error_3d_single.c

................\affine_registration_error.m

................\affine_registration_image.m

................\affine_transform.m

................\affine_transform_2d_double.c

................\affine_transform_2d_double.m

................\affine_transform_3d_double.c

................\affine_transform_3d_single.c

................\image_interpolation.c

................\image_interpolation.h

................\make_transformation_matrix.m

functions_nonrigid

..................\bspline_error_2d_double.c

..................\bspline_error_3d_double.c

..................\bspline_error_3d_single.c

..................\bspline_registration_gradient.m

..................\bspline_registration_image.m

..................\bspline_transform.m

..................\bspline_transform_2d_double.c

..................\bspline_transform_2d_double.m

..................\bspline_transform_3d_double.c

..................\bspline_transform_3d_single.c

..................\image_interpolation.c

..................\image_interpolation.h

..................\movepixels.m

..................\movepixels_2d_double.c

..................\movepixels_2d_double.m

..................\movepixels_3d_double.c

..................\movepixels_3d_single.c

images

......\brain1.png

......\brain2.png

......\brain3.png

......\landmarks.mat

......\landmarks1.png

......\landmarks2.png

......\lena.jpg

......\lenag1.png

......\lenag2.png

......\lenag3.png

......\lenag4.png

......\prostate1.png

......\prostate2.png

license.txt

low_level_examples

..................\addpaths.m

..................\example_2d_affine.m

..................\example_2d_nonrigid_1.m

..................\example_2d_nonrigid_2.m

..................\example_2d_nonrigid_3.m

..................\example_3d_affine.m

..................\example_3d_nonrigid.m

..................\get_example_data.m

manually_warp_images.fig

manually_warp_images.m

register_images.m

register_volumes.m